PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g111920.1
Common NameMTR_3g111920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 85aa    MW: 9718.83 Da    PI: 6.2491
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g111920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.9e-10345444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     WT eE  ++ da + +G++   +W  +a+ +g g++  ++k ++
  Medtr3g111920.1  3 WTREENRRFEDALAVYGPEdpnRWQHVANAVG-GKSIQEVKMHY 45
                     *****************99*************.********999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.171153IPR017930Myb domain
PfamPF002498.2E-8345IPR001005SANT/Myb domain
CDDcd001671.38E-7349No hitNo description
SMARTSM007177.4E-5351IPR001005SANT/Myb domain
SuperFamilySSF466894.34E-12356IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-5351IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MGWTREENRR FEDALAVYGP EDPNRWQHVA NAVGGKSIQE VKMHYEILKE DLIRIEHDQI  60
PLPTYRGGAG INITNGRQFG NEQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-203811189RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462127.12e-57MYB family transcription factor
SwissprotF4JVB84e-24RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A072V2S42e-57A0A072V2S4_MEDTR; MYB family transcription factor
STRINGGLYMA04G03360.12e-43(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153651012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-25RAD-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]